Example and atlases data

Sample data you can use to test MIRACL and the data for the atlases used by MIRACL can be found here:

Dropbox Data Link

The Atlases folder contains templates, annotations, histology, ontology graph info and LUT/label description of the Allen Reference Atlas (ARA).

The Data folder contains test data with example inputs and outputs for the registration and segmentation modules.

For a detailed description and input parameters please check the respective help or tutorial of each module.

Note

The sample data used in the ACE workflow tutorials is hosted on HuggingFace and can be downloaded from here (Mode 2) and here (stats). For convenience, the data can also be downloaded directly from within a MIRACL container using:

$ cd <WHERE YOU WANT TO DOWNLOAD DATA>
$ download_sample_data

This will open an interface where you can select which dataset you want to download.