Citing MIRACL

Citation guidelines for using MIRACL in your work.

MIRACL publication

If you use MIRACL in your work please cite our paper:

APA

Goubran, M., Leuze, C., Hsueh, B., Aswendt, M., Ye, L., Tian, Q., Cheng, M.Y., Crow, A., Steinberg, G.K., McNab, J.A., Deisseroth, K., and Zeineh, M. (2019). Multimodal image registration and connectivity analysis for integration of connectomic data from microscopy to MRI. Nature communications, 10(1), 5504.

BibTeX

@article{goubran2019multimodal,
  title={Multimodal image registration and connectivity analysis for integration of connectomic data from microscopy to MRI},
  author={Goubran, Maged and Leuze, Christoph and Hsueh, Brian and Aswendt, Markus and Ye, Li and Tian, Qiyuan and Cheng, Michelle Y and Crow, Ailey and Steinberg, Gary K and McNab, Jennifer A and Deisseroth, Karl and Zeineh, Michael},
  journal={Nature communications},
  volume={10},
  number={1},
  pages={5504},
  year={2019},
  publisher={Nature Publishing Group UK London}
}

Tools used by MIRACL

Some of our functions build on or use these tools (please cite their work if you are using them):

Tool

Function

Allen Regional Atlas

Atlas registration

Allen Connectivity Atlas

Connectivity analyses

ANTs

Registration

Fiji

Segmentation

c3d

Image processing

FSL

Diffusion MRI processing

MRtrix3

Tractography

TrackVis/DTK

Tractography