Tutorials
The tutorial structure generally matches the module/function structure of MIRACL. Refer to the Legend section for syntax information.
Choose the tutorial for the function you are interested in from its respective module in the sidebar/TOC or go to our Getting started section for a tutorial on MIRACL's general usage.
Note that not all functions have tutorials yet…we are working on it!!!
- Legend
- Getting started
- Workflows
- ACE **new feature**
- Main Inputs
- CLI
- Main outputs
- Example of running ACE on single subject (segmenation + registration + voxelization + warping) (link to sample data):
- Example of running ACE flow on multiple subjects:
- Example of running only ACE segmentation module on one single subject (link to sample data):
- Example of running only ACE cluster wise analysis on voxelized and warped segmentation maps (link to sample data):
- Jupyter notebook
- CLARITY-Allen registration
- STA
- CLARITY segmentation
- ACE **new feature**
- Conversion
- Registration
- Stats
- Segmentation
- Utilities
- HPC/SLURM clusters